San Juan River
Streamflow, conditions and background by watershed segment. Data through November 1, 2026.
Major flood on the San Juan River
Readings through Nov 4, 10:45 PM Mountain time
3 Weather Service gauges on this river reached flood stage in the last 3 days. The map marks each with a diamond; one that pulses was in flood at its last reading, and a dashed ring means the gauge has stopped reporting.
San Juan River at Pagosa Springs, CO
Major floodPeak 13.8 ft on Nov 2, 8:15 AM. Major flood starts at 12.6 ft. Last reading Nov 4, 10:00 PM: 7.8 ft, below flood stage. Weather Service gauge page
San Juan River at Farmington
Major floodPeak 12.2 ft on Nov 2, 1:15 PM. Major flood starts at 12.0 ft. Last reading Nov 4, 8:30 AM: 5.3 ft, below flood stage. The gauge has sent nothing since. Weather Service gauge page
San Juan River at Shiprock
Moderate floodPeak 19.9 ft on Nov 3, 3:30 AM. Moderate flood starts at 18.0 ft. Last reading Nov 4, 10:00 PM: 13.2 ft, below flood stage. Weather Service gauge page
Not a warning. This page is rebuilt at least once a day, and again when a river's flood status changes, so it can be hours out of date. For what is happening now, see the Weather Service's current river levels and its flood safety advice.
Where it is
Segments are the HUC8 watersheds the gauges sit in, numbered upstream to downstream. Use the buttons to switch between the state and the river.
- 1Upper San Juan
- 2Middle San Juan
- 3Lower San Juan-Four Corners
- river and reservoirs
- gauge
- moderate flood
- major flood
About the San Juan River
- Below Navajo Dam near Farmington, New Mexico, the river's cold tailwater is promoted by New Mexico State Parks as a world-class fly-fishing destination.12
- The river is also the focus of the San Juan River Basin Recovery Implementation Program, a cooperative effort begun in 1992 among New Mexico, Colorado, several tribes and federal agencies to recover the endangered Colorado pikeminnow and razorback sucker while water development continues in the basin.3
This report follows 247 miles (398 km) of the San Juan River across 3 watershed segments, from Upper San Juan downstream to Lower San Juan-Four Corners. At the lower end of the report the river drains about 18,147 square miles. Named tributaries joining it here include the Chaco River, Animas River, Montezuma Creek, McElmo Creek and Los Pinos River. Reservoirs on this reach: Navajo Reservoir. Largest urban areas near it: Bloomfield, Kirtland and Shiprock. 11 gauges with at least 26 weeks of daily flow cover 1930 to 2026.
From the archive: NHDPlus river network, WBD watersheds, NHD waterbodies, TIGER urban areas and the report's gauges.
From the headwaters down
Each watershed segment in order, with last week's flow rated against the same week in 1991–2020.
Segment 1: Upper San Juan
985 cfs last week above normal.
Towns: Bloomfield.
Water 9.7 °C at San Juan River Near Archuleta, NM. Median conductance 256 µS/cm in the 2020s. Rain over the last 3 months: 248% of normal.
Segment 2: Middle San Juan
4,369 cfs last week much above normal.
Towns: Kirtland, Shiprock.
Water 17.9 °C at San Juan River At Shiprock, NM. Median conductance 458 µS/cm in the 2020s. Rain over the last 3 months: 239% of normal.
Segment 3: Lower San Juan-Four Corners
9,156 cfs last week much above normal.
Water 10.5 °C at San Juan River At Four Corners, CO. Median conductance 523 µS/cm in the 2020s.
Culture
- In Farmington, Aztec, Bloomfield and Kirtland, water diverted through community acequias watered the fields that fed generations of families, according to New Mexico Magazine, which quotes a local museum director saying, "It's all about the rivers. Early homesteaders were farming."4
- New Mexico's Office of the State Engineer lists community-operated acequias — including the Hillside, Greenhorn and Highland Park ditches — on the La Plata River, a San Juan tributary within the basin.5
Habitat
- The Colorado pikeminnow, first listed as endangered in 1967 and given full Endangered Species Act protection in 1973, is a large Colorado River Basin minnow that can grow up to 6 feet long and is being reintroduced into the San Juan River.3
- The razorback sucker was listed as endangered and given full Endangered Species Act protection in 1991; this Colorado River Basin sucker can reach 36 inches long and is part of the recovery program's reintroduction efforts across the river system.3
- The San Juan River Basin Recovery Implementation Program was established through a 1992 cooperative agreement among Colorado, New Mexico, the U.S. Fish and Wildlife Service, the Bureau of Reclamation, the Bureau of Land Management, the Bureau of Indian Affairs, the Ute Mountain Ute Tribe, the Southern Ute Indian Tribe, the Jicarilla Apache Nation and the Navajo Nation, which guide recovery actions through Biology and Coordination committees.3
Reservoirs
| Reservoir | Completed | Main purpose | Storage, acre-ft |
|---|---|---|---|
| Navajo LakeNavajo Dam | 1963 | water storage | 1,986,600 |
| Built by the Bureau of Reclamation as a unit of the Colorado River Storage Project — authorized in 1956 and dedicated in 1962 — Navajo Dam stands 402 feet high on the San Juan River about 34 miles east of Farmington and provides irrigation and municipal water supply, flood control, recreation, hydropower, and fish and wildlife benefits; the tailwater fishery below it is promoted by New Mexico State Parks as a world-class fly-fishing destination.21 | |||
From the archive: National Inventory of Dams (USACE) and the reservoir registry.
Water users
- The Navajo Indian Irrigation Project, authorized by Congress in June 1962, diverts water at an average annual rate of 508,000 acre-feet from the San Juan River at Navajo Dam Reservoir, about 40 miles upstream of Farmington, to serve roughly 110,000 acres of Navajo tribal land on a plain south of the river.6
- New Mexico's Office of the State Engineer tracks named diversions on the San Juan River itself — including the Citizens/BID, Turley, Hammond and Jewett Valley diversions — along with municipal water intakes for the cities of Farmington and Aztec.5
- The Navajo Nation and the United States signed a water rights settlement for the San Juan River Basin in New Mexico on December 17, 2010, closing decades of litigation and providing a water supply meant to reduce water hauling and support future growth on the reservation.7
- Under the Jicarilla Apache Tribe Water Rights Settlement Act of 1992, the Nation's settlement contract provides for diverting 33,500 acre-feet per year from Navajo Reservoir or the Navajo River, plus 6,500 acre-feet per year from the San Juan-Chama Project.8
Surface water withdrawn, 2020
In the counties this river crosses (Rio Arriba, San Juan): 556,569 acre-feet. County totals include other streams.
| Use | Share (bar) | Share | Acre-ft |
|---|---|---|---|
| Irrigated agriculture | 80% | 445,036 | |
| Reservoir evaporation | 10% | 53,064 | |
| Power | 6% | 32,474 | |
| Public water supply | 4% | 21,555 | |
| Commercial | 1% | 4,253 |
State Engineer, New Mexico Water Use by Categories 2020.
Irrigation districts and acequias
- Hammond Conservancy District (44,212 acres mapped)
- Bloomfield Irrigation District (22,580 acres mapped)
State Engineer's irrigation districts and acequia layers.
Public water systems beside the river
Navajo Dam Domestic Water Consumers Inc, Farmington Water System, West Hammond MDWCA, Blanco MDWCA, Animas Valley Land & Water, Lower Valley Water Users Association
State Engineer's public water systems layer (service areas within 2 km).
Sources
Numbered sources for the statements above, as they were read when the page was prepared.
- Navajo Lake State Park, New Mexico Energy, Minerals and Natural Resources Department — State Parks Division (read 2026-09-28)
- Navajo Dam, U.S. Bureau of Reclamation, Upper Colorado Region (read 2026-09-28)
- San Juan River Basin Recovery Implementation Program, U.S. Fish & Wildlife Service (read 2026-09-28)
- Explore San Juan County in Northwest New Mexico, New Mexico Magazine (New Mexico Department of Tourism) (read 2026-09-28)
- Water Measurement System — San Juan Basin (District 5, Aztec), New Mexico Office of the State Engineer (read 2026-09-28)
- Bureau of Reclamation to Plan and Construct Navajo Indian Irrigation Project for Operation by BIA, Bureau of Indian Affairs (read 2026-09-28)
- Salazar Signs San Juan Navajo Water Rights Settlement at Colorado River Water Users Association Conference, U.S. Department of the Interior (read 2026-09-28)
- Jicarilla Apache Tribe Water Rights Settlement Act of 1992, University of New Mexico Digital Repository (Native American Water Rights Settlements collection) (read 2026-09-28)